DOI: https://doi.org/https://doi.org/10.57187/4893
The COVID-19 pandemic exerted immense pressure on healthcare systems worldwide, compelling countries to reorganise care at both national and hospital levels [1]. Responses varied across Europe, ranging from Sweden’s strategy emphasising herd immunity [2, 3] to France’s stringent lockdowns and implementation of COVID-19 passes to limit public access primarily to immune individuals [4, 5]. At the hospital level, many countries reduced elective surgeries and non-urgent care, re-allocating resources to manage the surge of COVID-19 patients in acute care units [6]. Additionally, fear of COVID-19 infection among the general population may have led patients to delay or avoid seeking medical care, thereby further increasing barriers to healthcare access [7, 8].
Since the onset of the COVID-19 pandemic, numerous authors have raised concerns that both individual and systemic barriers may have compromised the quality of care for non-COVID patients during and after the pandemic waves [9, 10]. With rising human activity and the ongoing effects of climate change, the frequency of epidemics and pandemics is expected to increase [11, 12]. Understanding how the management of epidemic waves has affected non-COVID care is essential to building resilience in healthcare systems.
During the first COVID-19 wave, Switzerland recorded a relative excess mortality of 8.5% [13]. This figure may not be solely attributable to COVID-19-related deaths but also to factors such as delays in surgery [14], intensive care triage [15], patients avoiding care [16] and delays in treatment for non-COVID conditions [17].
This article aims to explore how COVID-19 waves and hospital reorganisation affected the care of non-COVID-19 patients by analysing excess mortality, transfer rates to intermediate and intensive care units and length of stay at Geneva University Hospital during the first three waves of the COVID-19 pandemic. These parameters were compared to the inter-wave periods as well as pre- and post-pandemic years.
In this retrospective cohort study, we analysed Electronic Health Record (EHR) data from all non-COVID-19 inpatients of Geneva University Hospital (HUG) from 1 January 2019 to 1 March 2023.
HUG is a tertiary university hospital located in Geneva, Switzerland. Although the Canton of Geneva has a population of about 530,000, HUG serves as the reference university hospital for the wider Greater Geneva cross-border region, amounting to roughly 1.5 million inhabitants and daily commuters. It manages around 60,000 inpatient stays and 1.2 million outpatient visits annually. Although data from other care centres were, initially, to be included in the study protocol, robust data could not be obtained for this analysis.
At HUG, the first COVID-19 cases were admitted in February 2020. By March, the hospital had established dedicated acute, intermediate and intensive care units to manage the growing influx of COVID-19 patients. Significant structural changes were implemented during the pandemic: the number of beds was increased, elective surgeries were cancelled to repurpose surgical units for COVID patients, and additional intensive and intermediate care beds were created [18, 19]. Non-COVID cases were partially redirected to other regional secondary care facilities including a private secondary hospital and several private clinics in the canton that temporarily admitted non-severe patients with public insurance. Furthermore, many physicians, particularly from surgical departments or newly certified practitioners, were reassigned to COVID care.
Given that these changes were introduced and lifted incrementally, defining exact COVID-19 periods is challenging. For this study, we considered the hospital to be in “COVID mode” whenever the number of inpatients with a main diagnosis of COVID-19 exceeded 100 patients per week, representing 5 average units of 20 patients fully dedicated to COVID cases. To account for the high variability in weekly admissions, we computed a 4-week moving average of cases per week and based the definition of waves on this criterion. On 10 March 2022, despite a still-high absolute number of COVID-19 inpatients, HUG’s pandemic management committee held its final meeting and officially declared the hospital to have returned to pre-crisis operations. This decision was based on a steady decrease in new COVID-19 admissions and a reduced proportion of severe cases. These changes also enabled the resumption of non-emergent surgeries. This date was therefore used as the end of the last COVID-19 wave at HUG (figure 1).

Figure 1COVID-19 wave determination. COVID-19 wave periods were determined as ≥100 patients per week hospitalised with COVID-19 as a main ICD-10 diagnosis. Pre- and post-COVID-19 periods were defined as the 1-year period before and after the COVID-19 period. The end of the third COVID-19 wave was defined as the date at which Geneva University Hospital’s internal committee for pandemic management held its last meeting and declared the institution out of the crisis. It is represented by the dotted vertical line on the graph.
This classification identified three COVID-19 waves interspersed with two inter-wave periods (figure 2). Pre- and post-COVID-19 periods were defined as the 1-year period before the first wave and the 1-year period following the last wave. Patients were classified into the following COVID-19 phases:
To ensure the reliability of this classification, wave characteristics, including the number of COVID-19 and non-COVID-19 patients per week, were computed and compared before further analysis.

Patient inclusion chart.
Four clinically relevant outcomes were assessed across the three COVID-19 waves, the inter-wave periods and the pre- and post-COVID-19 periods: in-hospital mortality, rate of transfer to intermediate and intensive care units, and lengths of stay. These outcomes were chosen for their potential to capture disruptions in care quality during and after the pandemic.
Anonymised data were extracted from the hospital’s Electronic Health Record (EHR) using the admission date as the index date. Each hospitalisation was treated as an individual event without considering potential readmission of the same patients. Hospitalisations were defined as patients aged over 18 staying at least one night at the hospital outside the emergency care department. Exclusion criteria included hospitalisations directly to the intensive care unit – whether a transfer from another hospital or an ICU admission directly from the emergency room – and hospitalisation to the Psychiatry department or the Woman-Mother-Child department. These departments were excluded because our chosen outcomes – mortality, transfers to ICU or IMCU, length of stay – are not appropriate indicators of care quality in obstetric or psychiatric settings, where clinical trajectories and risks differ substantially from those of general medical and surgical patients. Mortality was defined using death dates that are automatically updated into the EHR for patients living in Geneva. Transfers to intensive or intermediate care units were defined by a stay in one of the intensive or intermediate care units of the hospital. Non-COVID patients were defined based on their main diagnosis at discharge, meaning that patients with a positive COVID-19 test were counted as non-COVID patients if their main diagnosis at discharge was not SARS-CoV-2 infection. We considered excluding all patients with a positive test but on verification this led to a loss of over 50% of patients during the peak of some waves including many patients that likely had asymptomatic or paucisymptomatic infections (table S1 in the appendix).
Analyses were conducted in R version 4.4.2 using the comorbidity library [20]. Unadjusted differences were initially visualised using means and 95% confidence intervals (95% CI) for length of stay, and proportions with exact 95% CIs for in-hospital mortality and for transfers to intermediate and intensive care units. Patient characteristics were compared using the Kruskal–Wallis test for non-parametric quantitative variables (age and Charlson score) and Fisher’s exact tests for all the qualitative variables. Multivariable analyses were then conducted, employing a generalised linear model with a gamma regression and a log link for length of stay and logistic regressions for the remaining outcomes. COVID-19 periods were compared using the pre-COVID period as a reference, adjusting for demographic and hospitalisation variables to account for potential confounders.
Demographic variables included sex, age, region of residence (Geneva, other Swiss region, outside Switzerland) and insurance status (basic vs private).
Hospitalisation variables included frequent internal medicine diagnoses identified by the main ICD-10 diagnosis code (Stroke, Chronic obstructive pulmonary disease [COPD], Pulmonary embolism, Heart failure, Pneumonia, Sepsis, Myocardial infarction and other diagnoses), level of care (acute vs rehabilitation), Charlson Comorbidity Index approximated using the R comorbidity package on the ICD diagnosis list and hospital department (surgery vs medicine). The diagnosis categories were selected because they represent common internal medicine conditions and because most COVID-19-related organisational changes occurred within this department. The level of care variable distinguishes between acute hospitalisations and rehabilitation stays, the latter characterised by lower physician- and nurse-to-patient ratios and greater involvement of allied health professionals such as physiotherapists and dietitians. As we used routinely collected electronic health data, there were no missing data. No additional data cleaning procedures were performed, and all values were included as recorded in the source database.
This study was approved by the Geneva ethics committee (CCER-2020-01017) which waived the need to obtain informed consent, due to the retrospective nature of the study. This study was performed in accordance with relevant local regulations and followed the STROBE guidelines [21]. It was supported by a research grant attributed by a private hospital research grant called the Sennart Fund, which had no role in designing the protocol, or collecting or interpreting data.
There were 245,766 unique admissions to HUG over the study period. After removing admissions to the paediatric, psychiatry and women-mother-child departments, patients hospitalised directly in intensive care units, patients aged below 18 years and admissions without at least one overnight stay, there were 160,821 non-COVID-19 admissions included in the study (figure 2). Of these, 22,972 were admitted during the three COVID-19 waves, 51,252 during the pre-COVID-19 period, 46,753 during the inter-wave periods and 39,844 during the post-COVID period (table 1). Overall, during the COVID-19 waves, non-COVID-19 patients were older, more likely to reside within the hospital region and much less likely to be admitted to the surgery department. During the first wave specifically, non-COVID-19 patients were more often women, less likely to have private insurance and less frequently admitted to acute care units. The main diagnosis also saw significant variations during the first wave with an increase in the proportion of patients with a main diagnosis of stroke, pulmonary embolism or myocardial infarction.
Table 1Characteristics of COVID-19 waves and patients.
| Pre-COVID-19 | Wave 1 | Wave 2 | Wave 3 | Inter-wave | Post-COVID-19 | p-value | ||
| Hospital occupation variables | ||||||||
| Non-COVID admissions | 51,252 | 2837 | 9833 | 10,302 | 46,753 | 39,844 | ||
| Non-COVID patients/week | 790.3 | 405.3 | 578.4 | 707.0 | 742.0 | 783.4 | ||
| COVID admissions | 433 | 410 | 937 | 486 | 913 | 264 | ||
| COVID admissions/week* | 6.7 | 58.6 | 55.1 | 33.3 | 14.5 | 5.2 | ||
| Demographic variables | ||||||||
| Non-COVID admissions | 51,252 | 2837 | 9833 | 10,302 | 46,753 | 39,844 | ||
| Women, n (%) | 25,112 (49.0%) | 1433 (50.5%) | 4798 (48.8%) | 5049 (49.0%) | 23,088 (49.4%) | 19,725 (49.5%) | 0.353 | |
| Age, median [IQR] | 70.0 [53.0–82.0] | 72.0 [55.0–83.0] | 71.0 [54.0–83.0] | 71.0 [54.0–83.0] | 68.0 [51.0–81.0] | 69.0 [52.0–82.0] | <0.001 | |
| Residence, n (%) | Geneva | 45,190 (88.2%) | 2560 (90.2%) | 8832 (89.8%) | 9102 (88.4%) | 41,163 (88.0%) | 34,800 (87.3%) | <0.001 |
| Other Swiss Canton | 2990 (5.8%) | 149 (5.3%) | 544 (5.5%) | 593 (5.8%) | 2872 (6.1%) | 2350 (5.9%) | ||
| Non-Swiss | 3072 (6.0%) | 128 (4.5%) | 457 (4.6%) | 607 (5.9%) | 2718 (5.8%) | 2694 (6.8%) | ||
| Private insurance, n (%) | 5814 (11.3%) | 251 (8.8%) | 1090 (11.1%) | 1287 (12.5%) | 5903 (12.6%) | 5217 (13.1%) | <0.001 | |
| Hospitalisation variables | ||||||||
| Main diagnosis, n (%) | Stroke | 1421 (2.8%) | 109 (3.8%) | 356 (3.6%) | 278 (2.7%) | 1333 (2.9%) | 908 (2.3%) | <0.001 |
| COPD | 718 (1.4%) | 30 (1.1%) | 96 (1.0%) | 119 (1.2%) | 405 (0.9%) | 373 (0.9%) | ||
| Pulmonary embolism | 319 (0.6%) | 42 (1.5%) | 82 (0.8%) | 76 (0.7%) | 264 (0.6%) | 201 (0.5%) | ||
| Heart failure | 1894 (3.7%) | 102 (3.6%) | 345 (3.5%) | 429 (4.2%) | 1448 (3.1%) | 1420 (3.6%) | ||
| Pneumonia | 1776 (3.5%) | 43 (1.5%) | 140 (1.4%) | 254 (2.5%) | 646 (1.4%) | 1049 (2.6%) | ||
| Sepsis | 570 (1.1%) | 46 (1.6%) | 119 (1.2%) | 102 (1.0%) | 460 (1.0%) | 383 (1.0%) | ||
| Myocardial infarction | 871 (1.7%) | 59 (2.1%) | 165 (1.7%) | 195 (1.9%) | 768 (1.6%) | 661 (1.7%) | ||
| Other | 43,683 (85.2%) | 2406 (84.8%) | 8530 (86.7%) | 8849 (85.9%) | 41,429 (88.6%) | 34,849 (87.5%) | ||
| Acute stay, n (%) | 42,826 (83.6%) | 2251 (79.3%) | 7984 (81.2%) | 8437 (81.9%) | 38,627 (82.6%) | 33,927 (85.1%) | <0.001 | |
| Charlson Comorbidity Score, n (%) | 0–3 | 46,099 (89.9%) | 2469 (87.0%) | 8850 (90.0%) | 9180 (89.1%) | 42,256 (90.4%) | 35,929 (90.2%) | <0.001 |
| 4–7 | 2278 (4.4%) | 156 (5.5%) | 477 (4.9%) | 545 (5.3%) | 2052 (4.4%) | 1816 (4.6%) | ||
| 8–11 | 2766 (5.4%) | 199 (7.0%) | 492 (5.0%) | 553 (5.4%) | 2379 (5.1%) | 2047 (5.1%) | ||
| 12+ | 109 (0.2%) | 13 (0.5%) | 14 (0.1%) | 24 (0.2%) | 66 (0.1%) | 52 (0.1%) | ||
| Surgery department, n (%) | 8952 (17.5%) | 206 (7.3%) | 894 (9.1%) | 1297 (12.6%) | 8210 (17.6%) | 7167 (18.0%) | <0.001 | |
*The number of COVID-19 admissions per week is under 60 during the COVID-19 waves because those are the number of admissions divided by the number of weeks in order to allow comparisons between periods of different lengths. The COVID-19 periods were defined using >60 patients as a moving average over a 4-week period which explains these numbers being lower than 60.
Pre- and post-COVID-19 periods were comparable in terms of the number of non-COVID-19 patients per week. However, the COVID-19 waves varied substantially from one another. The first wave showed the sharpest reduction in admission of non-COVID-19 patients, with an almost 50% decrease, from a mean 790.3 patients per week pre-COVID-19 to 405.3. This wave also recorded the highest number of COVID cases, with an average of 58.6 hospital admissions per week for patients with a primary diagnosis of COVID-19. During the inter-wave periods, the number of non-COVID-19 cases returned to levels closer to those of pre- and post-COVID-19 periods, averaging 742.0 new cases per week.
All COVID-19 waves were associated with statistically significant increases in mortality among non-COVID-19 patients, with the first wave showing the highest spike at 6.0%, representing a 50% relative increase.
Intermediate care transfer rates were comparable pre- and post-COVID-19, averaging 14.7%. During all COVID-19 waves and inter-wave periods, these rates increased significantly, peaking at 20.9% in the first wave. Intensive care transfer rates remained stable at around 5.3% during the pre-COVID-19 period and first COVID-19 wave. However, they declined substantially during subsequent waves, inter-wave periods and the post-COVID-19 period, reaching a nadir of 3.8% during the third wave.
Length of stay (LOS) of non-COVID-19 patients increased sharply during the first COVID-19 wave, with a mean increase of 2.03 days and a median increase of 0.7 days compared to the pre-COVID-19 period. LOS gradually declined across subsequent waves and into the post-COVID-19 period. In-hospital mortality remained stable at approximately 4.0% before and after the pandemic (figure 3 and table S2 in the appendix).

Figure 3Variations in length of stay, mortality rate and transfers to intermediate and intensive care units during COVID-19 periods. Pre-COVID rates are extended as a blue line to display the expected rates for each phase.
The adjusted model revealed a significant increase of in-hospital mortality during all the COVID-19 waves, with the sharpest rise observed during the first wave (OR: 1.27; 95% CI: 1.07–1.51) (table 2). Interestingly, there was also a statistically significant decrease in mortality during the inter-wave periods (OR: 0.91; 95% CI: 0.85–0.97).
Table 2Multivariable logistic regression on in-hospital mortality rate and intermediate care transfer rate.
| In-hospital mortality | Intermediate care transfer | ||||||
| Odds ratio | 95% CI | p-value | Odds ratio | 95% CI | p-value | ||
| COVID-19 period | |||||||
| Pre-COVID-19 | ref | ref | ref | ref | ref | ref | |
| Wave 1 | 1.27 | [1.07–1.51] | 0.007 | 1.47 | [1.32–1.62] | <0.001 | |
| Wave 2 | 1.18 | [1.06–1.32] | 0.002 | 1.16 | [1.09–1.24] | <0.001 | |
| Wave 3 | 1.12 | [1.01–1.25] | 0.035 | 1.09 | [1.02–1.16] | 0.010 | |
| Inter-wave | 0.91 | [0.85–0.97] | 0.006 | 1.11 | [1.07–1.15] | <0.001 | |
| Post-COVID-19 | 0.99 | [0.92–1.06] | 0.741 | 1.00 | [0.96–1.04] | 0.929 | |
| Demographic variables | |||||||
| Men | 1.21 | [1.15–1.28] | <0.001 | 1.14 | [1.11–1.17] | <0.001 | |
| Age | 18–34 | ref | ref | ref | ref | ref | ref |
| 35–54 | 3.19 | [2.35–4.34] | <0.001 | 1.44 | [1.34–1.54] | <0.001 | |
| 55–74 | 7.43 | [5.53–9.99] | <0.001 | 1.85 | [1.73–1.97] | <0.001 | |
| 75+ | 15.70 | [11.72–21.05] | <0.001 | 1.64 | [1.53–1.75] | <0.001 | |
| Origin | Geneva | ref | ref | ref | ref | ref | ref |
| Other Swiss | 0.62 | [0.52–0.75] | <0.001 | 1.12 | [1.05–1.19] | <0.001 | |
| Non-Swiss | 1.02 | [0.91–1.16] | 0.709 | 1.26 | [1.19–1.34] | <0.001 | |
| Insurance | Common | ref | ref | ref | ref | ref | ref |
| Private | 0.62 | [0.57–0.67] | <0.001 | 1.43 | [1.37–1.49] | <0.001 | |
| Hospitalisation variables | |||||||
| Main diagnosis | Other* | ref | ref | ref | ref | ref | ref |
| Stroke | 1.37 | [1.20–1.56] | <0.001 | 17.13 | [15.93–18.43] | <0.001 | |
| COPD | 1.05 | [0.84–1.32] | 0.644 | 0.94 | [0.82–1.07] | 0.339 | |
| Pulmonary embolism | 0.90 | [0.67–1.22] | 0.504 | 2.52 | [2.20–2.90] | <0.001 | |
| Heart failure | 1.11 | [0.99–1.24] | 0.075 | 1.07 | [1.00–1.16] | 0.058 | |
| Pneumonia | 0.90 | [0.77–1.04] | 0.162 | 0.56 | [0.50–0.62] | <0.001 | |
| Sepsis | 4.21 | [3.70–4.80] | <0.001 | 4.21 | [3.81–4.66] | <0.001 | |
| Myocardial infarction | 1.33 | [1.11–1.60] | 0.002 | 15.01 | [13.73–16.41] | <0.001 | |
| Acute stay | 3.34 | [3.02–3.68] | <0.001 | 5.77 | [5.40–6.17] | <0.001 | |
| Charlson | 0–3 | ref | ref | ref | ref | ref | ref |
| 4–7 | 2.54 | [2.32–2.78] | <0.001 | 2.41 | [2.27–2.55] | <0.001 | |
| 8–11 | 8.69 | [8.12–9.29] | <0.001 | 1.28 | [1.20–1.36] | <0.001 | |
| 12+ | 21.34 | [16.47–27.64] | <0.001 | 2.60 | [2.00–3.37] | <0.001 | |
| Department | Medicine | ref | ref | ref | ref | ref | ref |
| Surgery | 0.08 | [0.07–0.10] | <0.001 | 0.47 | [0.45–0.50] | <0.001 | |
* “Other” main diagnoses are all those other than the seven prespecified.
Higher age categories, male sex (OR: 1.21; 95% CI: 1.15–1.28) and higher Charlson severity index were associated with higher in-hospital mortality. In contrast, private insurance was associated with reduced mortality (OR: 0.62; 95% CI: 0.57–0.67).
Intermediate care transfer rates increased during all COVID-19 waves and inter-wave periods, returning to pre-COVID-19 values in the post-COVID-19 period (table 2). The largest increase was observed during the first wave (OR: 1.47; 95% CI: 1.32–1.62). In contrast, intensive care transfer rates were comparable to pre-COVID-19 levels (table 3). However, subsequent waves, inter-wave periods and the post-COVID periods showed significantly lower intensive care transfer rates, with the third wave recording the sharpest decrease in transfer rate (OR: 0.70; 95% CI: 0.62–0.78). For both intermediate and intensive care, transfers were more likely in patients with private insurance (intermediate care, OR: 1.43, 95% CI: 1.37– 1.49; intensive care, OR: 1.11; 95% CI: 1.04–1.19).
Table 3Multivariable logistic regressions on transfers to intensive care units and gamma regression for length of stay.
| Intensive care transfer | Length of stay | ||||||
| Odds ratio | 95% CI | p-value | exp(coef) | 95% CI | p-value | ||
| COVID-19 period | |||||||
| Pre-COVID-19 | ref | ref | ref | ref | ref | ref | |
| Wave 1 | 0.97 | [0.82–1.16] | 0.746 | 1.05 | [0.99–1.10] | 0.099 | |
| Wave 2 | 0.80 | [0.72–0.89] | <0.001 | 0.95 | [0.92–0.98] | 0.002 | |
| Wave 3 | 0.70 | [0.62–0.78] | <0.001 | 0.97 | [0.94–1.00] | 0.034 | |
| Inter-wave | 0.76 | [0.71–0.81] | <0.001 | 0.94 | [0.93–0.96] | <0.001 | |
| Post-COVID-19 | 0.74 | [0.69–0.79] | <0.001 | 0.94 | [0.92–0.95] | <0.001 | |
| Demographic variables | |||||||
| Men | 1.31 | [1.25–1.38] | <0.001 | 1.01 | [0.99–1.02] | 0.448 | |
| Age | 18–34 | ref | ref | ref | ref | ref | ref |
| 35–54 | 1.37 | [1.24–1.51] | <0.001 | 1.31 | [1.27–1.35] | <0.001 | |
| 55–74 | 1.55 | [1.41–1.71] | <0.001 | 1.65 | [1.60–1.69] | <0.001 | |
| 75+ | 0.61 | [0.55–0.68] | <0.001 | 2.04 | [1.98–2.09] | <0.001 | |
| Origin | Geneva | ref | ref | ref | ref | ref | ref |
| Other Swiss | 1.81 | [1.66–1.97] | <0.001 | 1.11 | [1.08–1.14] | <0.001 | |
| Non-Swiss | 1.90 | [1.76–2.05] | <0.001 | 0.92 | [0.89–0.95] | <0.001 | |
| Insurance | Common | ref | ref | ref | ref | ref | ref |
| Private | 1.11 | [1.04–1.19] | 0.003 | 1.01 | [0.99–1.03] | 0.371 | |
| Hospitalisation variables | |||||||
| Main diagnosis* | Other | ref | ref | ref | ref | ref | ref |
| Stroke | 2.62 | [2.35–2.92] | <0.001 | 1.02 | [0.98–1.06] | 0.369 | |
| COPD | 2.07 | [1.74–2.47] | <0.001 | 1.01 | [0.94–1.08] | 0.802 | |
| Pulmonary embolism | 1.78 | [1.39–2.28] | <0.001 | 0.93 | [0.85–1.02] | 0.134 | |
| Heart failure | 0.89 | [0.76–1.03] | 0.119 | 1.20 | [1.16–1.25] | <0.001 | |
| Pneumonia | 0.53 | [0.43–0.66] | <0.001 | 0.95 | [0.90–0.99] | 0.016 | |
| Sepsis | 6.75 | [5.97–7.63] | <0.001 | 1.52 | [1.42–1.63] | <0.001 | |
| Myocardial infarction | 3.47 | [3.11–3.87] | <0.001 | 0.85 | [0.80–0.89] | <0.001 | |
| Acute stay | 6.99 | [6.02–8.11] | <0.001 | 0.37 | [0.36–0.37] | <0.001 | |
| Charlson | 1.12 | [1.11–1.133] | <0.001 | 1.10 | [1.09–1.10] | <0.001 | |
| 0–3 | ref | ref | ref | ref | ref | ref | |
| 4–7 | 2.86 | [2.63–3.11] | <0.001 | 1.72 | [1.66–1.78] | <0.001 | |
| 8–11 | 1.13 | [1.02–1.25] | 0.017 | 1.63 | [1.58–1.69] | <0.001 | |
| 12+ | 1.80 | [1.18–2.76] | 0.007 | 2.55 | [2.15–3.01] | <0.001 | |
| Department | Medicine | ref | ref | ref | ref | ref | ref |
| Surgery | 0.53 | [0.49–0.58] | <0.001 | 0.63 | [0.61–0.64] | <0.001 | |
* “Other” main diagnoses are all those other than the seven prespecified. Length of stay was modelled using a gamma regression and is reported as the exponentiated coefficient.
While the observed increase in LOS during the first COVID-19 wave was no longer significant in the adjusted model, the observed reduction post-COVID-19 remained significant, though small (table 3).
In this observational study of more than 150,000 patients with a non-COVID-19 main diagnosis (i.e. non-COVID patients) in a large tertiary hospital, important changes in patient-relevant clinical outcomes were observed over the 4-year study period.
An increased in-hospital mortality among non-COVID-19 patients, particularly prominent during the first COVID-19 wave, was observed and remained significant after adjustment. Several factors may have contributed to this finding. First, the high pressure on hospital capacity during the COVID-19 waves may have led to the selective admission of more-severe cases. Although our multivariable model accounted for key prognostic variables, residual confounding cannot be ruled out. Additionally, the cancellation of surgeries and patients delaying care due to fear of contamination likely resulted in more-severe conditions upon admission for non-COVID patients [14], contributing to higher in-hospital mortality [17]. This interpretation is supported by the increase in the proportion of life-threatening diagnoses like pulmonary embolism and myocardial infarction and the increase in the Charlson Comorbidity Index during the first wave, when patients with a score of 8 or higher rose from 5.6% to 7.5% compared to the pre-COVID-19 period (table 1). Other factors, such as reduced referrals to the hospital by general practitioners [16, 22] or stricter triage in the emergency care unit, may have further delayed treatment and exacerbated outcomes [23].
In most hospitals, drastic reorganisations were rapidly implemented to manage the influx of COVID-19 patients. For instance, intermediate care units, postoperative care facilities and operating theatres were repurposed as ICUs [18], while additional intermediate care unit beds were opened [19]. Emergency care shifts were extended from 10 to 12 hours, and many healthcare professionals were reassigned to roles outside their primary field of expertise.
Interestingly, the extent of these disruptions varied across the three COVID-19 waves, which may explain the observed differences in excess mortality. The first wave, during which non-COVID-19 activities were most heavily restricted, displayed the highest excess mortality compared to the pre-COVID-19 period. In contrast, the second and third waves imposed fewer restrictions on non-COVID-19 admissions and coincided with lower excess mortality. These findings suggest that maintaining some level of normal care delivery during pandemic surges may help mitigate excess mortality among all patients. Selective management of less-severe non-COVID patients outside the hospital may have led to residual confounding by patient severity, possibly contributing partially to the observed excess mortality, but this hypothesis remains speculative and hardly quantifiable.
Beyond these structural changes, healthcare workers experienced intense psychological pressure, resulting in increased anxiety and a documented need for psychological support that was difficult to access [24, 25]. Prolonged working hours [26, 27], lack of expertise due to being assigned to unfamiliar specialties and psychological distress [28] are all factors associated with higher rates of medical errors, potentially compromising the quality of care.
Lastly, increased mortality may have been partially attributed to nosocomial COVID-19 infections. Since non-COVID-19 cases were defined by the absence of COVID-19 as a primary diagnosis, some excess mortality could be linked to healthcare-associated COVID-19 infections in otherwise non-COVID-19 patients. However, while this factor may explain part of the observed mortality, the incidence of COVID-19 infections within the hospital was 9.2 per 100 hospitalisations, which is comparable to the population rate in Geneva [29], suggesting that healthcare-associated infections alone are unlikely to fully account for the increase in mortality.
During the inter-wave period, the mortality rate was significantly reduced (OR: 0.91, 95% CI: 0.85–0.97) compared to pre-COVID-19 levels. This temporary reduction in mortality, following periods of increased mortality, may be explained by a mortality displacement or harvesting effect. This phenomenon, well-documented in other crises such as heat waves [30] and influenza epidemics [31], occurs when the most vulnerable individuals succumb during the crisis, leading to a subsequent, compensatory period of reduced mortality. Our findings are consistent with previous research that observed a similar post-crisis mortality pattern following the first COVID-19 wave in northern Italy [32].
ICU transfers of non-COVID-19 patients progressively decreased across subsequent waves, despite the admission of more-severe patients with higher mortality rates [17]. However, the demand for ICU beds increased due to both COVID-19 and non-COVID-19 patients requiring critical care. This pressure led to the development of a new triage algorithm, designed to allocate scarce ICU resources as equitably as possible [15, 33]. Although this algorithm, intended to limit ICU admissions in case of resource shortages, was not formally deployed at our hospital, its development might have improved the consistency and application of admission criteria. In parallel, the pandemic prompted the widespread adoption of high-flow ventilation [34] and the expansion of intermediate care units beds which led to the implementation of local triage procedures between intensive and intermediate care [19]. These measures likely contributed to the reduction of ICU transfers by providing effective alternatives to ICU admissions. The persistence of this reduction of ICU transfers beyond the pandemic suggests a structural reorganisation rather than a temporary crisis-driven measure. As this shift was not accompanied by increased mortality, it likely reflects more efficient triage of patients. Acute care teams may have gained greater confidence in managing selected cases outside the ICU and in identifying those most likely to benefit from intensive care. The expanded use of high-flow oxygen therapy and enhanced monitoring in intermediate care settings probably reinforced this transition towards a more selective and effective allocation of critical care resources.
Finally, an increase in length of stay was noted for non-COVID-19 patients during the first wave; however, this association disappeared after adjusting for patient and hospital characteristics. Two main reasons may explain this change.
Firstly, non-COVID patients during the first wave were generally older, a well-established risk factor for longer hospital stays [35]. Secondly, the hospital implemented a policy of cancelling all elective surgeries, which likely influenced the distribution of hospitalised patients. Overall, the decreasing trend in length of stay is aligned with previous studies indicating that efforts to reduce hospital LOS are effective [36, 37].
Interestingly, two covariates showed noteworthy associations with our outcomes: insurance status and advanced age.
First, privately insured patients were significantly less likely to die and more likely to be admitted to intermediate care units and ICUs. In Switzerland, mandatory basic health insurance covers most hospitalisation costs. However, individuals may purchase optional supplementary private insurance, which primarily offers accommodation benefits, such as private rooms, but may also promote faster access to treatments or free choice of surgeon [38]. Private insurance may serve as a proxy for higher socioeconomic status, which is known to be associated with lower in-hospital mortality [39]. Additionally, privately insured patients may be more proactive in seeking high levels of care and might be more likely to opt in for ICU admission when discussing advanced directives. However, this finding raises the possibility of preferential treatment for privately insured patients when assigning scarce intermediate care and ICU beds. While previous studies have generally found no effect or even a lower likelihood of ICU admission for privately insured patients [40, 41], ensuring equitable care remains a critical concern that warrants further investigation.
Second, patients aged 75 years and older were more likely to be admitted to intermediate care and to die, while being significantly less likely to be transferred to intensive care units. This finding aligns with recent studies showing that age is negatively associated with ICU admission rates, independently of comorbidity or frailty [42, 43]. Several mechanisms have been proposed, including limited ICU bed availability, physicians’ prognostic considerations and patients’ reduced preference for intensive care interventions [43, 44].
Both associations arise from analyses that were not specifically designed to explore these effects and should therefore be interpreted with caution and investigated further in dedicated studies [45].
The main strength of this study is its large sample size, encompassing all patients admitted over a 4-year period and focusing on in-hospital outcomes that were fully documented. Methodological efforts were undertaken to reduce selection bias and remaining confounders by selecting COVID-19 periods based on an objective measure and by adjusting for hospital, patient and stay variables. There are also some limitations. First, the absence of standardised cause-of-death information in the electronic health record restricts our ability to differentiate between deaths caused by secondary COVID-19 infections and those resulting from the primary conditions for which the patients were admitted. Second, care unit reorganisation strategies varied between hospitals during the pandemic, and the monocentric design of the present study limits the generalisability of our findings. Reorganisation also occurred across waves, which provided within this study a unique opportunity to assess the impact of different organisation models on non-COVID-19 patient outcomes. The detailed description of our hospital’s strategy offers sufficient context for other hospital management teams to assess the applicability of our findings to their setting. Third, the covariables included in the analysis were constrained by the available data, leaving room for residual confounding. In particular, the main diagnosis was categorised into seven typical medical diagnoses, with approximately 80% of patients classified under “Other”. That said, our approach of comparing seven typical medical diagnoses versus all others was not intended to fully adjust for comorbidity, but rather to provide insight into whether the effects of the reorganisation differed across clinically relevant patient groups. Fourth, the definition of non-COVID-19 patients as patients without a primary diagnosis of COVID-19 may have excluded patients who were nevertheless hospitalised for this infection. However, this was necessary as patients during high waves almost all had a secondary diagnosis of COVID. Fifth, because repeat hospitalisations for the same patients could not be identified in the anonymised dataset, within-patient correlation could not be accounted for, which may lead to an underestimation of standard errors. Lastly, the observational nature of this study limits our ability to establish causal relationships between reorganisation efforts and the observed effects on patient outcomes.
This study evaluated the impact of successive COVID-19 waves and associated care reorganisation on non-COVID-19 patients’ in-hospital mortality, transfers to intermediate and intensive care units and length of stay. Adjusted analysis of over 150,000 non-COVID-19 patients revealed that mortality and intermediate care transfers increased during all three COVID waves whereas intensive care transfers and length of stay consistently declined during and after the COVID period.
These opposite trends likely reflect both the structural reorganisation of care, such as expanded intermediate care capacity and stricter ICU admission criteria, and indirect effects of delayed presentation or altered clinical decision-making during periods of crisis.
As future epidemics are likely, policymakers, hospital management teams and clinicians should anticipate these systemic trade-offs and design preparedness plans that protect access and quality of care for all patients.
The anonymised dataset of this study is available from the corresponding author upon reasonable request. The analytical code is available in the appendix.
This study was supported by a research grant attributed by a private hospital research grant called the Sennart Fund, which had no role in designing the protocol, or collecting or interpreting data.
All authors have completed and submitted the International Committee of Medical Journal Editors form for disclosure of potential conflicts of interest. No potential conflict of interest related to the content of this manuscript was disclosed.
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The appendix is available in the pdf version of the article at https://doi.org/10.57187/4893.